Assembled files separately first, then combined contigs.
Blasting on Inquiry...
Unix exact command:
blastall -p blastx -d "swissprot" -i Contig_fosmids_125620contigs.fa -m 8 -v 1 -b 1 -a 2 -o blastall.txt
Megablast on Sigenae..
note not really fosmids- these are reseq.
Started local job on macpro..
Galaxy...
Job 219 - megablast
megablast -i Contig_fosmids_125620contigs.fa -d cgigas_all_contigs_Signae.fa -m 8 -v 1 -b 1 -a 2
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~320,000 lines
format: tabular, database:
?
Info: megablast -d /galaxy/data/blastdb/nt/27jun2011/nt -i /galaxy/main_database/files/003/363/dataset_3363842.dat -o /tmp/2061759.cyberstar.psu.edu/tmpN8_Bi1 -m 8 -a 8 -W 28 -p 90.0 -e 0.001 -F T > /dev/null
Also going to take Vtg and go back on contig to find genomic.
Took less than a minute.
